At BioVis 2013, our work received an honorable mention award in the Data contest!

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JProfileGrid v2.0.5 software 
JProfileGrid v2.0.5 source code 
New features include speed enhancements, overviews, second ProfileGrid window pane, meta data searching, grep filtering, and more.
Documentation is pending.

JProfileGrid v1.2.2 Software
JProfileGrid v1.0 Documentation

Requirements
JProfileGrid provides both command-line support and a graphical user interface. Software has been been tested on the Macintosh, Windows, and Linux platforms and should work on any system supporting the Java Runtime Environment (JRE) version 5.0 or higher.

Running JProfileGrid
To launch the graphical user interface under MacOS or Windows, double-click on the "JProfileGrid.jar" file icon.

Alternatively, for very large alignments (10,000+ of sequences of average length 500 residues) use a command such as the following in a terminal to give Java more memory:
% java -Xmx1024M -jar JProfileGrid2.jar
 

License for version 2.0
Software Copyright © 2012 ProfileGrid.org. All Rights Reserved.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

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© profilegrid.org last modified 17-Jan-2013